#the 'rejection by chosen jedi is mentally dangerous' is known or guessed fairly quickly so all of them are trying to come up with

[somestorythoughts]

I'm picturing Obi-Wan meeting some of the other clones made for specific jedi on the way back to coruscant and - still overwhelmed and confused and trying not to visibly panic - and suddenly worrying like "shit are they gonna be jealous that Cody met his jedi first will there be issues?" only to find that there's almost no jealousy. Not none, but it's overwhelmed by the mix of joy and longing that comes with knowing they're about to meet their jedi and fulfill their given purpose as protectors. He doesn't know whether to be relieved or more concerned.

The collective WTF when the council found out resonated around the planet into any nearby ships. The louder WTF once the rest of the jedi learned about it resonated throughout the entire system.

Twist The Madness

Master Sifo-Dyas is the change point in this little bit of madness. 

In canon Sifo-Dyas is the Jedi that commissioned the Clone Army, driven mad by visions of a war that would destroy the Jedi, of the Jedi temple burning. It is unclear if he was seeing the results of the Clone Wars and Order 66 (thus, like Anakin, created the visions that drove him mad) or if he prevented his visions and Order 66 was something different entirely. It is also unclear if he was patsy of the Sith from the beginning, or if his plan was hijacked by the Sith at a later point.

But what if his takeaway from his visions and the madness they drove him to was just a bit different. Not an army, but protectors. 

Sifo-Dyas still commissioned 1 million clones but not all at once. Instead it would be an ongoing order for generations. The initial amount decanted would be 100,000 clones, most would grow at a double rate until they reach physical adulthood, then their aging would be slowed to normal for near humans. Their training would be generalized and the calling they would be raised with would be to protect the Jedi Temples. The intention being that they would be spread throughout the active temples and live amongst the Jedi there. Approximately 10,000 had a slightly different charge. Each would be raised for a specific Jedi, their genetics tweaked so that they would be a perfect companion and protector (including aging the clone to either adulthood or to match their assigned Jedi and then matching their aging to their Jedi). 

Jango Fett is still contracted to be the progenitor for the clones, but not because of his ability to kill Force Users. Instead it is his genetics themselves that separates him out from other bounty hunters. Due to the crossbreeding of his ancestors, his genetic code is particularly malleable, meaning that the genetic modifications needed to match Clone to a specific Jedi are that much easier. He was not expected to provide training, thus he simply provided generic material  (enough over the course of one year for all 1 million clones in the order), is paid a massive amount of credits plus 1 son (Boba) and leaves; he has no idea that this order is for the Jedi.  

At his request there is a specific genetic marker that is artificially added to all of the clones but Boba so that none of them can claim to be him or his son. He also signs a truly impressive number of agreements that released him from responsibility for the clones AND guaranteed that he knew that he was being cloned (Look, realistically the ethical issue with cloning a sentient being centers around the being being cloned, not the clones themselves; the ethical issues with the clones and their sentience is sentient trafficking).

I want it to be clear here. Sifo-dyas was still driven to madness before he commissioned the clones. He and master Dooku were working together on this project, sharing the madness. Dooku does not fall to the darkside here, though he does still leave the Jedi Order. Though their machinations see that the Clones on the whole are treated better, as they are meant to be companions and protectors of the Jedi, the clones are very much being raised for a destiny that they were not able to choose (with all the ethical issues that come with that). There is a heavy focus and even heavier propaganda throughout the clones' childhood of how they are, in a very real sense, being raised for the Jedi. It is also very heavily referenced that the Jedi as a whole do not know about the Clone yet, since they were a surprise.

The 10,000 who were being raised for a specific Jedi grew up with every piece of information that could be found about their Jedi. Their training was tailored to the Jedid they were assigned to.  The information/propaganda/brainwashing was so specific for these 10,000 that after about the age of 3 chronologically, (a variety of ages physically, though age 6 is the most common for the clone that are meant to go to the adult Jedi), the clones whose Jedi died before they could meet could not be retrained. Instead their fellow clones consider them to be a living memorial for the lost Jedi (It is a really weird cultural development, but both Sifo-Dyas and Dooku allow it-They want the Clones as a culture to be in a symbiotic relationship with the Jedi and this fit in with that). 

Sifo-Dyas’s plan did derail Dooku’s fall entirely, instead of causing Sifo-dyas’s death Dooku ghosted Palpatine around the time of the Naboo invasion. It never occurs to Dooku to let anyone know that Palpatine is a Sith. 

Fast forward about 10 years, Dooku and Sifo-Dyas construct a far too complicated, dramatic plan to lure Obi Wan to Kamino. As far as they are concerned it is only right that Obi Wan gets ‘his’ clone protector, Cody, first (as Dooku’s grand padawan).  It actually somewhat mirrors cannon, in that Anakin is sent on a mission to escort Senator Padme Amidala to Naboo (this is actually a separate plan by Palptine, who is trying to corrupt Anakin.In this Padme has been little more than a puppet for Palpatine for years-Her will is so strong that she has retained little bits of her own sense of self, as long as Palpatine is not in the equation but nothing like what she should have been)  alone, as a test to see how ready he is to take his trials. Dooku then hires a bounty hunter, not Jango Fett, to lure Obi Wan to Kamino. 

Obi Wan is met on Kamino by the Kaminoans first but also an all but visibly vibrating Cody. This Cody is radiating adoration and glee into the Force at finally meeting ‘his’ Jedi. It should be noted that Cody’s presence in the Force could not have been more perfect for Obi Wan. Cody gives the full tour to a mildly shellshocked Obi Wan; including introducing him to Rex, who has been raised for Anakin (I debated Rex going to Anakin or Ahsoka, but ultimately decided that Echo and Fives (together as twins) were meant for Ahsoka). They end the tour with a meeting with Dooku and Sifo Dyas who explain the clones.  

Now Dooku and Sifo-Dyas deliberately have Cody stay while they explain who and what the clones were meant to be.  Obi Wan already does not want to hurt Cody and there are only so many ways one can say ‘What the fuck do you mean cloned protectors?’ and all of them could be read as a rejection of the clones themselves. Dooku also manages to make it clear to Obi Wan without stating it outright, thus in Obi Wan’s eyes leaving Cody in the dark, that if the Jedi Order rejects the clones they (the clones) will all be killed as defective.

So now Obi Wan gets to make a very carefully worded call to the Jedi High Council about the new 100,000 lives they need to become responsible for (who will be murdered if they don’t), of which about 10,000 have been brainwashed so thoroughly that barring them from ‘their Jedi’ might actually cause very real psychological harm.  Also politically the Jedi appears to have just acquired an army, possibly of slaves.

Like, even without the war, the sheer magnitude of What the Fuck that comes with ‘These people think we own them, their entire sense of self rests on how well they serve us. How do we tell them we don’t without breaking their sense of self’. Also being told that Dooku and Sifo-Dyas, who have not technically broken any laws(they used Dooku’s money instead of the Jedi’s so there is not even any fraud), would continue to have the Kaminoans produce clones and give them to the Jedi Order until the 1 million already paid for have been decanted. 

I am just saying, everyone on the high council needed to take a minute. Obi Wan also needed to take a minute. Oddly enough Obi Wan’s minute of panic came just before Anakin would have slaughtered the Tuskens (Controlled Padme was under orders to get Anakin in as many situations as possible that would cause him to reach for the dark. Including following a vision of his mother dying). That moment of panic disrupted the rage and pain enough that Anakin did not reach for the dark side or slaughter the Tuskens.  He escaped with his mothers body instead. 

They manage to get all 100,000 clones back to the Coruscant Temple without causing a panic or a diplomatic incident with the Senate (in spite of Palpatine watching like a hawk for anything he could use to discredit the Jedi, after his most reliable source of information ghosted him).  Then the Jedi made a point of asking each and every clone what they actually wanted to do (they were truly at a loss as to what else to do). Of the 90,000 generally trained, about 500 did not want to be protectors of the Jedi. As the Jedi’s response is immediately ‘Do you know what you want to do? If not, we can help you figure it out. We can get you education and whatever resources you want to pursue your dream’ with the manic air of someone who really wants help but has no idea how to, caused the remaining 89,500 generally trained clones to not just cement but weld their loyalties to the Jedi. Like they were all ready to die for the Jedi before, because of propaganda,  but now that they were even more amazing than the Clones had thought…now the loyalty of these clones is that much deeper (frankly the Jedi remain worried about this). For the 10,000 clones that were trained for specific Jedi, they actually had to stop asking because without fail the thought of not being able to protect ‘their’ Jedi led to a panic attack. 

So now we have the Jedi who have kinda been forced to accept these protectors and companions.  The adult Jedi are working really hard to figure out a balance between trying to break the brainwashing and letting the clones have the autonomy to act on their own desires (since their desires are ‘protect the Jedi’). The children in the Creche were simply introduced to their companions with the hope that being raised together can mitigate some of the training (This also means that the creche and classes have to be rapidly adjusted so that they can accommodate the clones as well). 

For some angsty flavor, we see the Jedi coming to love (romantic, familial, sexual, platonic, or other) their Clone companions and being constantly beset by thought of ‘how can I act on these feelings, they don’t have a choice’ and ‘they think the belong to me…?’. And as far as the clones are concerned everything that their Jedi does reinforces how they are deserving of the clones' loyalty and love.

Note: I do want you all to know that sudden addition of Rex following Anakin around AND the lack of war did derail Anidala before it began