#kjunction
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febos ยท 2 months ago
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ARTEM: THE tool for RNA 3D motif identification, with backbone permutations!
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ARTEM identifies RNA tertiary motifs based purely on their isostericity. We applied it to search for kink-turn-like motifs and discovered two new kink-turn topologies, multiple no-kink variants of the motif, and showed that a ribosomal junction in bacteria forms either a kink or a no-kink variant depending on the species (see the Figure). We also identified kink-turns in the catalytic core of group II introns, whose structures have not previously been characterized as containing kink-turns.
ARTEM opens a fundamentally new way to study RNA 3D folds and motifs and analyze their correlations and variations.
Want to learn more? - Check out our preprint on bioRxiv doi.org/10.1101/2024.05.31.596898 - ARTEM is available for you on GitHub https://github.com/david-bogdan-r/ARTEM https://github.com/febos/ARTEM-KT
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