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Semantic Annotation of Experimental Methods in Analytical Chemistry Palmblad et al., Anal Chem. doi: 10.1021/acs.analchem.2c03565.
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Identification of hub ferroptosis-related genes and immune infiltration in lupus nephritis using bioinformatics. Hu, et al., Scientific reports doi: 10.1038/s41598-022-23730-8.
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Lymphatic metastasis-associated circRNA‒miRNA‒mRNA network for exploring the pathogenesis and therapeutic target of triple negative breast cancer based on whole-transcriptome sequencing analysis: an experimental verification study. Luo, et al., Journal of translational medicine doi: 10.1186/s12967-022-03728-6.
#Open access publication#Whole transcriptome sequencing#Triple-negative breast cancer#cirRNA#metastasis
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Single-cell profiling reveals distinct adaptive immune hallmarks in MDA5+ dermatomyositis with therapeutic implications. Ye, et al., Nature communications doi: 10.1038/s41467-022-34145-4.
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Integrated network pharmacology and experimental analysis unveil multi-targeted effect of 18α- glycyrrhetinic acid against non-small cell lung cancer. Irshad, et al., Frontiers in pharmacology doi: 10.3389/fphar.2022.1018974.
cytoHubba is available from the Cytoscape App Store.
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Systematic analysis of circRNA biomarkers for diagnosis, prognosis and therapy in colorectal cancer. Xiao, et al., Frontiers in genetics doi: 10.3389/fgene.2022.938672.
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Bioinformatics analysis constructs potential ferroptosis-related ceRNA network involved in the formation of intracranial aneurysm. Zhu, et al., Frontiers in cellular neuroscience doi: 10.3389/fncel.2022.1016682.
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Identification of DNA methylation-regulated differentially expressed genes in RA by integrated analysis of DNA methylation and RNA-Seq data. Zhang, et al., Journal of translational medicine doi: 10.1186/s12967-022-03664-5.
ReactomeFIPlugIn is available from the Cytoscape App Store.
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A proteome-scale map of the SARS-CoV-2–human contactome. Kim et al., Nat Biotechnol. 2023; 41(1): 140–149.
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Inhibition of mTOR signaling protects human glioma cells from hypoxia-induced cell death in an autophagy-independent manner. Divé, et al., Cell death discovery doi: 10.1038/s41420-022-01195-y.
The WikiPathways app is available from the Cytoscape App Store.
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Characterization of serum protein expression profiles in the early sarcopenia older adults with low grip strength: a cross-sectional study. Wu, et al., BMC musculoskeletal disorders doi: 10.1186/s12891-022-05844-2.
cytoHubba is available from the Cytoscape App Store.
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Transcriptomic analysis of paternal behaviors in prairie voles. Duclot, et al., BMC genomics doi: 10.1186/s12864-022-08912-y.
EnrichmentMap is available from the Cytoscape App Store.
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Effect and mechanisms of kaempferol against endometriosis based on network pharmacology and in vitro experiments. Zhao, et al., BMC complementary medicine and therapies doi: 10.1186/s12906-022-03729-4.
cytoHubba is available from the Cytoscape App Store.
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Interleukin-22 regulates neutrophil recruitment in ulcerative colitis and is associated with resistance to ustekinumab therapy. Pavlidis, et al., Nature communications doi: 10.1038/s41467-022-33331-8.
stringApp is available from the Cytoscape App Store.
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Translatome profiling in fatal familial insomnia implicates TOR signaling in somatostatin neurons. Bauer, et al., Life science alliance doi: 10.26508/lsa.202201530.
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Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes. Mach, et al., Communications biology doi: 10.1038/s42003-022-03977-7.
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Tissue-specific pathway activities: A retrospective analysis in COVID-19 patients. Pham, et al., Frontiers in immunology doi: 10.3389/fimmu.2022.963357.
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